rs107786157 SNP Detail

Summary

• ID
  rs107786157
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191710201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCCTCCACA ATGGCACAGC CTCTGAGGTC CAATAAGACA
  CTAGGGAGGG AACCTGGGTG GTGGGGGAGG GTTCAGTGGA GATGGTTCTC ATTATGACAT
  Y
  GGGATGAAGA GGCACTTCTT GGAGATTGTC CACCATAGTC AGACCTAAGT ATCTGTACCT
  CTGCCTCAAT ATGAAGAAAA CTGACTGAGA TTCACCCGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146512947	ENSMUSSNP5200786	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320196689	CHEV_1_193802121	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs107786157					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191710201 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm70525	predicted gene, 70525			1899 bp downstream
Gm70534	predicted gene, 70534			56 bp upstream
Rd3	retinal degeneration 3			Intron
				mRNA-UTR
Rr426276	regulatory region 426276			857 bp distal
Rr426277	regulatory region 426277			675 bp distal
Rr426278	regulatory region 426278			1047 bp proximal
Tssr10797	transcription start site region 10797			851 bp downstream
Tssr10798	transcription start site region 10798			840 bp downstream
Tssr10799	transcription start site region 10799			795 bp downstream
Tssr10800	transcription start site region 10800			7 bp upstream
Tssr10801	transcription start site region 10801			44 bp upstream