rs107786918 SNP Detail

Summary

• ID
  rs107786918
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177150251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTGGGCG GGGGTGGGGG
  TGGGGCGAGC TAATGAACTA ATAATGCAAA GGAATGGGAA GGAGTGGGAA TGGATGGAAA
  AGTTTAAAGG GGGTCTGGGG GTAGGTGAAC ACTGAGGTCA GCCTAAGTTT TTGAAGTGAG
  GTCAGCAGCC CGGCATGTCT TGTTTTTTTT GGTTTGTTTG GTTTGTTTTG TTGTCCACAA
  C
  CCCCCCCCCC CCCACTTGCA GACTTTCCCA CGCCGCTGCC AAGAGGGTGG GGAGCAGTCG
  CGCAAGTGGA GGGGAAGCAG CAAAACCCGT GGCGCGGGTC GGGCCAGGTC GCGATGGAGG
  AGCTGCGACT GCGGGCTGCC GGGCGCGCAG AGAGCGCATT GTGCGGGAGC GCTGAATGGA
  ACAGGGCTAT GTGCGGGCGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146345174	ENSMUSSNP6501325	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320158856	CHEV_1_179252816	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs107786918					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177150251 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1079	CpG island 1079	43 bp proximal
Gm36904	predicted gene, 36904	within coordinates
Rr423981	regulatory region 423981	within coordinates
Rr423982	regulatory region 423982	67 bp proximal