rs107787055 SNP Detail

Summary

• ID
  rs107787055
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136390312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCTTTC TACTCCTAGA
  AGGGCTTTCT TTGCATTAGG TGTGTGTTTC CTCTTATCCT GTCCACCACT CTCCTGGTGG
  CTTGGGGGCC TCTGCCCTTA CAGAGAAGAA GTTCGTATTG GTCTGCGAAG ACTTTCCCGA
  GTCCAGACTC AGTTCCCTTT GAACAGATGG GCTGTGTGCT CCATGGCTTT GCCCCTTTTC
  W
  GTTTTGTTTG CAGCTCCTCT TGACCAAGTC CTGCATGTTC ATGTTCTTAT ATCTCTGTGC
  TCAGCCCTCC AGGCTGTCTT GCTTCCTTCA AGTCATCGCT GATGACTGCT TGTAGACGGA
  TGACTAGCAC ATCTATATTT ACAATCTGTT CTTTCCCCCT CTGGAAGGAT TTCTCAAGCC
  CTGCGACAAC GACAGTTGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135937013	ENSMUSSNP5008245	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs107787055					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136390312 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr585842	regulatory region 585842			within coordinates
Tssr31878	transcription start site region 31878			335 bp upstream
Tssr35850	transcription start site region 35850			101 bp downstream