rs107788885 SNP Detail

Summary

• ID
  rs107788885
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150627847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTATTGC TACCTGCCTG
  ATACATATTA TTGAAATTAT AATGTATTCT TATATAAAAC CATTTGTTTC TGCAATTTAT
  GTTGCTGTAA ACACTCCTAA CTAAACTCCC TTAATGATTA AGGGATTCAG AGACCACTCT
  GAGATGGTCC CCTAGGCAGG CAGTGTTGCC TCCTGACCTA TAAACGGTAA GAAATTTGGG
  Y
  TGGCCTAAAC CCTTTCAGAA CCTCAGCTTG CTTCCCTGCT CACCAATGAA ATGTTTCTCC
  TTCTTCTCCT TGTGCATGGC TGACTTCTTT CTGGATGGAA TTTTTCTTTA ACAACCAGAA
  AGGTTGTGAT TGATAGTAGC CTCTGCCCAT CCTTGGAGAG AATGCTGTAT ACTTAATTTG
  CAGCAGATTT TTTGTGTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147950575	ENSMUSSNP6605832	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107788885					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150627847 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12412	CpG island 12412	522 bp proximal
Gm30141	predicted gene, 30141	within coordinates
Pygb	brain glycogen phosphorylase	869 bp upstream
Rr397385	regulatory region 397385	619 bp upstream
Rr567100	regulatory region 567100	1601 bp distal
Rr567101	regulatory region 567101	318 bp proximal
Tssr20709	transcription start site region 20709	813 bp upstream
Tssr20710	transcription start site region 20710	879 bp upstream