rs107790048 SNP Detail

Summary

• ID
  rs107790048
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56527271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGAACCCAG TTCTCTTGGC TATACCTGGG GCAGTGTGAG
  CATGTGAAGA GACCCAGACA CAGTGGAGAA GTCTGTCATG GACGTAACTG CTGCTCTGCT
  R
  CAGCTGGGCC ACATTCACAC GTATCTGACA GGACCACTCA GGAGCTGACA CCAGAAGGGA
  CCAAAGGATT ACTAACCAGG GACTGTAGTT CCGGTCCCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss149044518	ENSMUSSNP5988878	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss324346589	CHEV_13_56480819	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs107790048					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56527271 () rs orientation: forward

Symbol	Name	Function Class
Rr272828	regulatory region 272828	530 bp proximal
Rr284344	regulatory region 284344	1330 bp proximal