rs107793748 SNP Detail

Summary

• ID
  rs107793748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:125855896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAGGAGG AACTAAAGTT
  CCACTTAGGT GTCTGAGGAT GGGGGTGACA AGCAGCCCAC CGCCCTATCA CTCCCTCGCT
  CAGAAGTGCC CACATGGCTT CTCCCACTGC CAAGTGCAAT ACAGAGCCTT TCTGGAAACA
  CGCTGGCCAT GGGCCTTCCT TCTAATAACT GACAGCATTA GCCATCAGAA ACCAGGAACA
  Y
  GGCTGACTTC AGAGGGGTTA AAAATGCTCT AGAACAGTGG TTCTCAACCT CCCTAACGCT
  GCAACCTTTC AATAGCTCCT GGTATTATGG TAACCCCCAA CAAAATTGTT TTCATTGCTA
  CTTCATAACG GCAATTCTTC TGCTGTTGTG AATAAATGTG AAATCTGAAT AAATGTGAAA
  GGGTCTTTAG AAGGTCACGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147404262	ENSMUSSNP7006720	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107793748					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:125855896 () rs orientation: forward

Symbol	Name	Function Class
Gm57079	predicted gene, 57079	within coordinates
Rr398483	regulatory region 398483	669 bp upstream
Rr599574	regulatory region 599574	741 bp distal
Rr599575	regulatory region 599575	512 bp proximal
Rr599576	regulatory region 599576	830 bp proximal