rs107794309 SNP Detail

Summary

• ID
  rs107794309
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:52121677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGT GTACCTGTGT GTGTCAGTAT
  R
  TGTGCCTGTG TATATCTGTG TGTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	MSM/Ms
ss148144114	ENSMUSSNP5101082	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	MSM/Ms
rs107794309					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:52121677 () rs orientation: forward

Symbol	Name	Function Class
Alcam	activated leukocyte cell adhesion molecule	within coordinates
Rr327240	regulatory region 327240	1179 bp proximal
Rr328951	regulatory region 328951	402 bp proximal
Tssr141422	transcription start site region 141422	44 bp downstream
Tssr141423	transcription start site region 141423	92 bp downstream
Tssr141424	transcription start site region 141424	441 bp downstream