rs107796584 SNP Detail

Summary

• ID
  rs107796584
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48532339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TGGCTTTTGT CACTTTGGCT ATGTGAGCTC AGAAGATGGC
  GGAGTGTTGT TTAAAACATC CTCCACTGTT GTGCCAGGGA AAAGTTAGTG ACCCCCCCCC
  M
  CCCCCCGCCA AACACACACA CACACACACA CACACACAGG AGCTGATCTG ATGCAACTCA
  CAGCAGGGTC TTTATTCTAT TCGAGCTAGC TCAAGCCCCC C                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133164144	ENSMUSSNP1498181	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107796584					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48532339 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17370	CpG island 17370	392 bp distal
Gm67220	predicted gene, 67220	within coordinates
Gm67227	predicted gene, 67227	632 bp upstream
Lrrc61	leucine rich repeat containing 61	within coordinates
Rr399635	regulatory region 399635	587 bp downstream
Rr629687	regulatory region 629687	643 bp distal
Rr629688	regulatory region 629688	590 bp distal
Rr629689	regulatory region 629689	within coordinates
Tssr56137	transcription start site region 56137	560 bp downstream
Tssr56138	transcription start site region 56138	443 bp downstream
Tssr60734	transcription start site region 60734	739 bp upstream
Tssr60735	transcription start site region 60735	718 bp upstream
Tssr60736	transcription start site region 60736	674 bp upstream