rs107797323 SNP Detail

Summary

• ID
  rs107797323
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25673587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAC AGCCATGCCC ATTGTCTCCC
  R
  AGAGTCAGCT GCAGGGCAGG GTGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	I/LnJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NZW/LacJ	PL/J	PWK/PhJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss923489593	MGP_WTSI_17_25454613	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	A	A	A	A	A	A	A	G	G	G	A	G	A	A	A	A	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	I/LnJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NZW/LacJ	PL/J	PWK/PhJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs107797323					SNP	A	G	A	A	A	A	A	A	A	G	G	G	A	G	A	A	A	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923489593	MGP_WTSI_17_25454613	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25673587 () rs orientation: forward

Symbol	Name	Function Class
Gm63608	predicted gene, 63608	within coordinates
Tekt4	tektin 4	within coordinates
Tssr143159	transcription start site region 143159	871 bp downstream
Tssr143160	transcription start site region 143160	60 bp downstream