rs107797573 SNP Detail

Summary

• ID
  rs107797573
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:18294558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGTTGAG ACCTCTATGA
  GAAAGTACTA CCCCTAGTTA AGAACAAATA GCTATAAATC TTGTGGACAA GCACCTAGCA
  ACCCATTCTG TTCTTTTTCT CCTGCTGAAC TTTTTACCTA GCCAATATCC TGCTTTTTTA
  GAACAGGTAC ATTCTCCCAG AAACAAAGCG ATTCTGTGTC ATATCCCCCC CCCCCCCCCG
  M
  CCCCCATACT CTACTTCTGT GGGCAATAAA ACCTGCCTGG GAATAATAAA AATTTGACAG
  CTTGAACAAT CAGACTTGCT GCCTGTCCTT TTGTTTCTCA TCCTTCATTC TCTCCACAGT
  TGGTTCTTCA CTCCCTGTTC GACTGTCTTG CGGGCTGGGA CAAAGATCCT TTATGATACC
  TGAGATGAAT CATTCTTTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148689429	ENSMUSSNP7117249	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs107797573					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:18294558 () rs orientation: forward

Symbol	Name	Function Class
Defb44-ps	defensin beta 44, pseudogene	770 bp upstream
Gm71262	predicted gene, 71262	665 bp upstream
Tssr11066	transcription start site region 11066	752 bp upstream
Tssr11067	transcription start site region 11067	726 bp upstream