rs107798083 SNP Detail

Summary

• ID
  rs107798083
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:38354144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TTCTGATATT ATTAGAAGCA TGCCAGAACA GACTGGTGAG
  AAGTAAACAA GAAAGTTTTC CTTTAATAAA ACTTTGCCAG AACTCAAAAA AAAAAAAAAC
  M
  AAAAAAAAAA AAAAAAAAAA AAACAAAACT CTAACATTCT CCCAGCAGCT CATAGCTCTG
  TTAAGAACTG AGACATAATT TCTGCCGCGG CTTCTGAGGA C                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133127196	ENSMUSSNP3408399	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107798083					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38354144 () rs orientation: forward

Symbol	Name	Function Class
D0Nds34	DNA segment, Nuffield Department of Surgery 34	within coordinates
Rpl30-ps1	ribosomal protein L30, pseudogene 1	55 bp downstream
Rr135132	regulatory region 135132	1857 bp proximal
Rr146156	regulatory region 146156	143 bp distal
Tssr55644	transcription start site region 55644	471 bp downstream