rs107804237 SNP Detail

Summary

• ID
  rs107804237
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:61214484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGACG CGGTGACGTC ACGTGGGGGA
  Y
  CGAGTCGCTC TGTAAGGGCG GGAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146621712	ENSMUSSNP1143090	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325886309	CHEV_19_61301949	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs107804237					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:61214484 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11146	CpG island 11146			within coordinates
Csf2ra	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Gm56644	predicted gene, 56644			within coordinates
Rr406075	regulatory region 406075			1465 bp downstream
Rr406076	regulatory region 406076			within coordinates
Rr406077	regulatory region 406077			1180 bp upstream
Rr550838	regulatory region 550838			1854 bp distal
Rr550839	regulatory region 550839			1905 bp distal
Rr550840	regulatory region 550840			792 bp proximal
Rr550841	regulatory region 550841			1320 bp proximal
Tssr157374	transcription start site region 157374			1606 bp downstream
Tssr157375	transcription start site region 157375			1563 bp downstream
Tssr157376	transcription start site region 157376			1501 bp downstream
Tssr157377	transcription start site region 157377			1436 bp downstream
Tssr157378	transcription start site region 157378			1362 bp downstream
Tssr157379	transcription start site region 157379			1284 bp downstream
Tssr157380	transcription start site region 157380			1446 bp upstream
Tssr157381	transcription start site region 157381			1711 bp upstream
Tssr160090	transcription start site region 160090			1440 bp upstream
Tssr160091	transcription start site region 160091			1416 bp upstream
Tssr160092	transcription start site region 160092			1292 bp upstream
Tssr160093	transcription start site region 160093			1197 bp upstream
Tssr160094	transcription start site region 160094			1135 bp upstream
Tssr160095	transcription start site region 160095			1048 bp upstream
Tssr160096	transcription start site region 160096			600 bp upstream
Tssr160097	transcription start site region 160097			404 bp upstream
Tssr160098	transcription start site region 160098			30 bp downstream
Tssr160099	transcription start site region 160099			238 bp downstream
Tssr160100	transcription start site region 160100			291 bp downstream
Tssr160101	transcription start site region 160101			604 bp downstream
Tssr160102	transcription start site region 160102			1147 bp downstream
Tssr160103	transcription start site region 160103			1259 bp downstream