rs107806717 SNP Detail

Summary

• ID
  rs107806717
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26727370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGT CGGTCGATCT TGTGCGGTGT
  M
  CTGTGGCCCT AAGTCCCCAA GTGCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss923492839	MGP_WTSI_17_26508396	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107806717					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923492839	MGP_WTSI_17_26508396	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26727370 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8810	CpG island 8810	1046 bp distal
Cpgi8811	CpG island 8811	within coordinates
Dusp1	dual specificity phosphatase 1	within coordinates
Gm56886	predicted gene, 56886	140 bp upstream
Rr339410	regulatory region 339410	within coordinates
Rr405112	regulatory region 405112	36 bp upstream
Rr405113	regulatory region 405113	408 bp upstream
Rr406958	regulatory region 406958	456 bp proximal
Tssr5044	transcription start site region 5044	555 bp upstream
Tssr5045	transcription start site region 5045	1067 bp downstream
Tssr5046	transcription start site region 5046	1120 bp downstream
Tssr5047	transcription start site region 5047	1129 bp downstream
Tssr143231	transcription start site region 143231	895 bp downstream
Tssr143232	transcription start site region 143232	252 bp upstream
Tssr143233	transcription start site region 143233	301 bp upstream
Tssr143234	transcription start site region 143234	353 bp upstream
Tssr143235	transcription start site region 143235	1305 bp upstream
Tssr143236	transcription start site region 143236	1330 bp upstream
Tssr146945	transcription start site region 146945	1938 bp upstream
Tssr146946	transcription start site region 146946	1880 bp upstream
Tssr146947	transcription start site region 146947	1859 bp upstream
Tssr146948	transcription start site region 146948	1833 bp upstream
Tssr146949	transcription start site region 146949	1765 bp upstream
Tssr146950	transcription start site region 146950	1224 bp upstream
Tssr146951	transcription start site region 146951	737 bp upstream
Tssr146952	transcription start site region 146952	189 bp upstream
Tssr146953	transcription start site region 146953	149 bp upstream
Tssr146954	transcription start site region 146954	67 bp downstream
Tssr146955	transcription start site region 146955	468 bp downstream
Tssr146956	transcription start site region 146956	1098 bp downstream
Tssr146957	transcription start site region 146957	1163 bp downstream