rs107815562 SNP Detail

Summary

• ID
  rs107815562
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172032698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAT CTTGACAGTG TACATGAAGG
  K
  GTGTGTGTGT GTGTGTGTGT GTGTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss120007333	PARCsnp_1.17745	PARC_SEQ	INBRED	f	SNP	T	G
ss120010234	PARCsnp_1.07384	PARC_SEQ	INBRED	f	SNP	T	G
ss320123193	CHEV_1_174135262	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs107815562					SNP	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172032698 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1038	CpG island 1038	1077 bp proximal
Gm17224	predicted gene 17224	1896 bp upstream
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr423483	regulatory region 423483	188 bp distal
Rr423484	regulatory region 423484	within coordinates
Rr423485	regulatory region 423485	346 bp proximal
Rr423486	regulatory region 423486	1663 bp proximal
Tssr294	transcription start site region 294	1497 bp downstream
Tssr295	transcription start site region 295	1549 bp downstream
Tssr296	transcription start site region 296	1625 bp downstream
Tssr297	transcription start site region 297	1656 bp downstream
Tssr15164	transcription start site region 15164	1523 bp downstream
Tssr15165	transcription start site region 15165	1553 bp downstream
Tssr15166	transcription start site region 15166	1644 bp downstream