rs107816398 SNP Detail

Summary

• ID
  rs107816398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56918508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGACAAAG CTGAGCAGAC
  TGGGCAGTTT GGACTGGCTC CTGGAGGACC CTTTAAGGGG CCCAGGGCTT TGTTTTCCCC
  CCACTCCCAG AATGACCAGA GTGAGTGGTC TGAGGAAGAA GGAAGGATGT TGGCAGCAGG
  ACATCTTCAT TATGTCCCAC TAAGGCTCAC ACACGGAAGG CGAGCCTCCC TGTGTGTGGG
  Y
  GCAGGGCTGG GATGGGGGTA GGAAGTGAGT GTGAGTGGGA GGGAAGAATG GGAGAACTTG
  AGAGCACTTT CTTCATCCAA CTTCCTTATA ACTTGTTCCA GACCTGAGGC TGTTTCTTCC
  CTGGCTAAAT GTCAACAGGA ATATACCTTT CAGTGTGTGC TTGTTAACAG AAACTGCAGT
  GATAGAGATA CAGCAAAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398561026	MGP_WTSI_17_56750931	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107816398					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398561026	MGP_WTSI_17_56750931	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56918508 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9367	CpG island 9367	1209 bp distal
Cpgi9368	CpG island 9368	1727 bp proximal
Gm56912	predicted gene, 56912	544 bp downstream
Micos13	mitochondrial contact site and cristae organizing system subunit 13	1737 bp upstream
Rpl36	ribosomal protein L36	1908 bp upstream
Rr340044	regulatory region 340044	707 bp distal
Rr340045	regulatory region 340045	92 bp proximal
Rr340046	regulatory region 340046	1692 bp proximal
Rr370299	regulatory region 370299	1565 bp downstream
Tssr5177	transcription start site region 5177	1990 bp upstream
Tssr145313	transcription start site region 145313	1592 bp downstream
Tssr145314	transcription start site region 145314	1847 bp upstream
Tssr145315	transcription start site region 145315	1884 bp upstream
Tssr145316	transcription start site region 145316	1928 bp upstream
Tssr148822	transcription start site region 148822	1822 bp upstream
Tssr148823	transcription start site region 148823	1793 bp upstream
Tssr148824	transcription start site region 148824	1689 bp upstream
Tssr148825	transcription start site region 148825	1674 bp upstream
Tssr148826	transcription start site region 148826	1569 bp upstream
Tssr148827	transcription start site region 148827	1537 bp upstream
Tssr148828	transcription start site region 148828	1503 bp upstream