rs107820829 SNP Detail

Summary

• ID
  rs107820829
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79661321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CAGCCTGGTC TACAGAATGA GTTCCAGGAC AGCCAGGGCT
  ACACAGAGAA ACCCTGTCTC GAAAAACCAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA
  C
  CCAAAAAAAA AAACAGAAGT TTGTTGTGTG ATCTGCAGTC AGGTATAGTT GGATCCAGGA
  GCTTTGATGT TTTTGGAAGA TTCCATGTTG GGTTTGGGAT T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147178869	ENSMUSSNP6328575	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs107820829					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79661321 () rs orientation: forward

Symbol	Name	Function Class
Misp	mitotic spindle positioning	within coordinates
Rr216663	regulatory region 216663	480 bp proximal
Rr225117	regulatory region 225117	920 bp distal
Rr228949	regulatory region 228949	1280 bp proximal
Tssr94404	transcription start site region 94404	869 bp downstream
Tssr94405	transcription start site region 94405	792 bp downstream
Tssr94406	transcription start site region 94406	767 bp downstream
Tssr94407	transcription start site region 94407	519 bp upstream
Tssr94408	transcription start site region 94408	631 bp upstream
Tssr94409	transcription start site region 94409	827 bp upstream