rs107825019 SNP Detail

Summary

• ID
  rs107825019
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:48040886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGTGTGGG CGGGCAGATG
  GAGTTTACCT TTATAATCCT ATTTTGGTCC ATGGAAGAGC CTTGGAATCC TATTATCTCT
  GGTCCAACGA GTCTCTCTTT GGTTGTGTCT CATGCTACTC AGGGTCTTGA TATAGGCAGC
  TTCTTGAAGG GGTGGGGGCC ATGGGAAGAA GGCATGCTTG GAGGCCCACT CACTCCTAAG
  Y
  GGGAGTGAGT AGAGGATGCT AAATCCTGTT GGAATTTAAG CACAGACTGA GGAGGGCTGG
  CACACCCTAG GCTTGAGGGC ACGAAGTGCT CCACTCACTA GCCTGTCCTC TATGTCCTGC
  CTCCCCTTGC AGCCACACAC ACCCGCTACA ACCCCAGCAA GTCCTCCACC TACTACACTC
  AAGGGCAGAC CTTCTCCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398352955	MGP_WTSI_17_47866910	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107825019					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398352955	MGP_WTSI_17_47866910	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48040886 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	Intron
Rr528106	regulatory region 528106	748 bp proximal
Tssr5147	transcription start site region 5147	1210 bp downstream
Tssr5148	transcription start site region 5148	648 bp upstream
Tssr5149	transcription start site region 5149	1522 bp upstream
Tssr145004	transcription start site region 145004	1219 bp downstream
Tssr145005	transcription start site region 145005	1198 bp downstream
Tssr145006	transcription start site region 145006	1169 bp downstream
Tssr145007	transcription start site region 145007	1137 bp downstream
Tssr145008	transcription start site region 145008	1116 bp downstream
Tssr145009	transcription start site region 145009	1088 bp downstream
Tssr145010	transcription start site region 145010	706 bp downstream
Tssr145011	transcription start site region 145011	687 bp downstream
Tssr145012	transcription start site region 145012	670 bp downstream
Tssr145013	transcription start site region 145013	618 bp downstream
Tssr145014	transcription start site region 145014	119 bp upstream
Tssr145015	transcription start site region 145015	181 bp upstream
Tssr145016	transcription start site region 145016	192 bp upstream
Tssr145017	transcription start site region 145017	637 bp upstream
Tssr145018	transcription start site region 145018	649 bp upstream
Tssr145019	transcription start site region 145019	680 bp upstream
Tssr145020	transcription start site region 145020	701 bp upstream
Tssr145021	transcription start site region 145021	727 bp upstream
Tssr145022	transcription start site region 145022	759 bp upstream
Tssr145023	transcription start site region 145023	786 bp upstream
Tssr145024	transcription start site region 145024	897 bp upstream
Tssr145025	transcription start site region 145025	1241 bp upstream
Tssr145026	transcription start site region 145026	1497 bp upstream
Tssr148459	transcription start site region 148459	1160 bp upstream
Tssr148460	transcription start site region 148460	1108 bp upstream
Tssr148461	transcription start site region 148461	1096 bp upstream
Tssr148462	transcription start site region 148462	1053 bp upstream
Tssr148463	transcription start site region 148463	680 bp upstream
Tssr148464	transcription start site region 148464	595 bp upstream
Tssr148465	transcription start site region 148465	160 bp downstream
Tssr148466	transcription start site region 148466	173 bp downstream
Tssr148467	transcription start site region 148467	668 bp downstream
Tssr148468	transcription start site region 148468	699 bp downstream
Tssr148469	transcription start site region 148469	789 bp downstream