rs107825523 SNP Detail

Summary

• ID
  rs107825523
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:73144383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCGC CTCGTCGGTG CTAGCCCCTA
  Y
  CACGCTGCCC TCTGGACCCT GGGCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325448129	CHEV_17_73186728	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs107825523					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:73144383 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9486	CpG island 9486	within coordinates
Rr340175	regulatory region 340175	within coordinates
Rr405431	regulatory region 405431	832 bp downstream
Tssr5197	transcription start site region 5197	1233 bp upstream
Tssr145775	transcription start site region 145775	729 bp downstream
Tssr145776	transcription start site region 145776	671 bp downstream
Tssr145777	transcription start site region 145777	638 bp downstream
Tssr145778	transcription start site region 145778	165 bp upstream
Tssr145779	transcription start site region 145779	236 bp upstream
Tssr145780	transcription start site region 145780	656 bp upstream
Tssr149306	transcription start site region 149306	81 bp downstream
Ypel5	yippee like 5	within coordinates