rs107825620 SNP Detail

Summary

• ID
  rs107825620
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:58180160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTAGTCCT TGCAACTTCG
  CCGCCTGAAG ACCGGCAAAA GTTGGCCGGT GCCAGCTTTC CCGCAGGGAT CAAACAGGTA
  ATGGCCTGGC ATCGTCGCTG TGGCTGCTGC TCTGGGCGCG GCACCGTCGC AGCACAGGAA
  TTCAGTCGCT GCAGGCACCC TCCAGAAGAG CGCGACAGCC TGGCGGAGGC CCCCTCCCTG
  C
  CTCGGCGGCC CCTCCCTCCC GGAACCCAGC TACTGGCTCC CGCCCGCCCG CCGCCCCCGA
  CCGCCCCACC CCCCGGGTGC AGAGTCCCCG CTCCCACGAA CACCTGTAGA AGATCAAGAC
  ACTGCCCCGT TGCCCAAAGC CCTCTTTCCT TTTCCCTAAA AGAGGCTTAG GGAGAAACAG
  TGATGGAGGA GGCACTTAGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MSM/Ms
ss134185154	ENSMUSSNP4953706	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	MSM/Ms
rs107825620					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:58180160 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22738	CpG island 22738	within coordinates
Fgf13	fibroblast growth factor 13	within coordinates
Rr4369	regulatory region 4369	441 bp proximal
Rr8657	regulatory region 8657	within coordinates
Tssr163463	transcription start site region 163463	425 bp upstream
Tssr163464	transcription start site region 163464	408 bp upstream
Tssr163465	transcription start site region 163465	380 bp upstream
Tssr163466	transcription start site region 163466	355 bp upstream
Tssr163467	transcription start site region 163467	83 bp upstream
Tssr163468	transcription start site region 163468	15 bp upstream