rs107826657 SNP Detail

Summary

• ID
  rs107826657
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:20363479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGACTGCGAG AAGGAAGCAG TTTGGGTTGA AAATTGAAGC
  AGGATTGGAA GAGGCTGAGT GAGTCCAGAG ACCACAGCTG TCCACAGCTT GGGAAAGCCT
  C
  ACTTACATCA TTTTCTTTAC CTCCCCAACA GAATTTAGAG TTTCATGTTT TCAGCTCCGT
  AGGCTTTGTT CATCCAGCTG GACTCACAAA AGGTAGCTG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss137276347	ENSMUSSNP6532917	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs107826657					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:20363479 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4468	CpG island 4468	730 bp distal
Gm49697	predicted gene, 49697	838 bp downstream
Gm61293	predicted gene, 61293	within coordinates
Rr463625	regulatory region 463625	1109 bp distal
Tssr112921	transcription start site region 112921	1215 bp downstream