rs107828201 SNP Detail

Summary

• ID
  rs107828201
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46855307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCCCCCG CTCTCACCCC
  CTAACACTAA CTAGGTAGGA GAAAACCAAG GATAGACAGG AAAGAGATCC TAGAGTCTGA
  TTTCTTTCCT TTTGTTTCTT TTTTTACCTC GGGCTACTAA CAAACCACAA CCAACCTTCT
  TAATGGCCAA CAACCACTCC ACACGCCTTT CAGGAGCCTA GCACTCATGC ACTCCGCACA
  C
  AGTCACAGAA ATTGTCTGAA GCTGGCAGAG CCAGGCTTCT ACTAGAGCAC GGAGTCAAGT
  CACAGTCAGC AGCTGCAGAC AGTCCGAAGC AGCCCCGCAG CCCACACCTG GGGCTACAAC
  AAAAGCCCAT TCTCATAATA TAGTTCTGGT TTTTAAAAGA AACCCAAATG CCAGAATTCT
  CAGAAATGTC ACTGCAGGGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145700316	ENSMUSSNP6554266	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107828201					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46855307 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9232	CpG island 9232	1576 bp proximal
Cul9	cullin 9	within coordinates
Rr527757	regulatory region 527757	1334 bp proximal
Rr527758	regulatory region 527758	1997 bp proximal
Tssr148330	transcription start site region 148330	1894 bp downstream