rs107829807 SNP Detail

Summary

• ID
  rs107829807
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152045071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAAATAA AAAATACCAG
  TGACGAAGTG CTTATTTGAG CTTGGCACAG CACTTTGCTC AAAGAATCCG GACAAACCTT
  TACTTTTGAA TTCTAGATAC CTCGTTTCTT CTTACTGAAA ATCACCAAGG AAACTGAATC
  TAAACATGAT CGTCACTAGC TGACAAACTT CCACAGTAGG CGTTCCGGTT TCTTACAGAA
  R
  TATAATGAAA ATAAACATGG AAGCAGTTTT ATGACTATTC AAATTTGTAA AAGAAACCAT
  AAAACATCAC TGCAAATGAC CTCACTCTTT GCATGCACCA AGCACTGGTT TATTAAAAGT
  GTCAATCACC GGAGTTTTCA TTTTTAACAT CCTGAAATTC TATTCTACAA CTCTGACTCT
  AAGAGCAAGA AGTGAACTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136102512	ENSMUSSNP3923476	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321028681	CHEV_3_152002398	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs107829807					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152045071 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13947	CpG island 13947	327 bp proximal
Miga1	mitoguardin 1	within coordinates
Rr66408	regulatory region 66408	871 bp distal
Rr77386	regulatory region 77386	129 bp proximal
Tssr36215	transcription start site region 36215	916 bp downstream