rs107831430 SNP Detail

Summary

• ID
  rs107831430
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150627887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTATTCT TATATAAAAC
  CATTTGTTTC TGCAATTTAT GTTGCTGTAA ACACTCCTAA CTAAACTCCC TTAATGATTA
  AGGGATTCAG AGACCACTCT GAGATGGTCC CCTAGGCAGG CAGTGTTGCC TCCTGACCTA
  TAAACGGTAA GAAATTTGGG CTGGCCTAAA CCCTTTCAGA ACCTCAGCTT GCTTCCCTGC
  Y
  CACCAATGAA ATGTTTCTCC TTCTTCTCCT TGTGCATGGC TGACTTCTTT CTGGATGGAA
  TTTTTCTTTA ACAACCAGAA AGGTTGTGAT TGATAGTAGC CTCTGCCCAT CCTTGGAGAG
  AATGCTGTAT ACTTAATTTG CAGCAGATTT TTTGTGTTTG TCACTGCAGC CTAGACTGGC
  GATTTGTATT TTGAGGAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147950584	ENSMUSSNP3430753	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107831430					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150627887 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12412	CpG island 12412	482 bp proximal
Gm30141	predicted gene, 30141	within coordinates
Pygb	brain glycogen phosphorylase	829 bp upstream
Rr397385	regulatory region 397385	579 bp upstream
Rr567100	regulatory region 567100	1641 bp distal
Rr567101	regulatory region 567101	278 bp proximal
Tssr20709	transcription start site region 20709	773 bp upstream
Tssr20710	transcription start site region 20710	839 bp upstream