rs107831563 SNP Detail

Summary

• ID
  rs107831563
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:54792358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTCAACATG TCCTTTATAG CAGAGAATGG AGAAGCCAGA
  AGAGGCTCTT GCCCATACCG GATTGAGGCT TCAAGAGCAG CTGGTGAGGG TGGGAGGGAA
  G
  CCAGAAGCAA GGGCCCTTGG TCCTGCACTC ACCCACTGGG ACACGAGTGG GTGTATTTCT
  ACCAATTAGG GTCACGCACA CAAAGGACAA AAAATGTCT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137771144	ENSMUSSNP5795542	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107831563					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:54792358 () rs orientation: forward

Symbol	Name	Function Class
Rr260899	regulatory region 260899	758 bp distal
Rr260900	regulatory region 260900	843 bp proximal
Rr263772	regulatory region 263772	1334 bp distal
Snx6	sorting nexin 6	766 bp downstream