rs107832834 SNP Detail

Summary

• ID
  rs107832834
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43878823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCCTAAC AGAAGTATGG
  ATGAAGGGGT ACTCATAGGA GCAACTGCGT CACTCCCACA CAGCACCACA GCTCCGTGGG
  TGCGAGCGAT GACTCATTAA AGCCGCAATC CTGGAGCTCT CTGCACTTTT GTATACATCC
  TGGCAATCCA AATCTCTCCT TTGTTCTTCA GTCCTTAGAA TCTCCAACCC CCCACCCCGC
  C
  CCCACCCCCG CCCCGCCCCC CGTTGTTTAC ACTTTTTATA CCGCTGAGAA AGAGCCCTCA
  AGAATCTTCC AAATTTCTGC TCCTATAGAG AACCTTTCAC ATCTCCACCT CCACCCCCAC
  GCCCTTGGAG AGGATGTTTG TATTTGCATG GAAATGTTTT TACAGCAATC ATTAATAGCC
  TAGTCAGACT GAGCTATGAG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	MA/MyJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss130844586	NCBIM37_NT_039649_chr17_43704881	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	MA/MyJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107832834					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130844586	NCBIM37_NT_039649_chr17_43704881	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43878823 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9171	CpG island 9171	391 bp proximal
Gm64747	predicted gene, 64747	within coordinates
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	186 bp upstream
Rr527121	regulatory region 527121	within coordinates
Rr527122	regulatory region 527122	348 bp proximal
Tssr144685	transcription start site region 144685	55 bp upstream
Tssr144686	transcription start site region 144686	164 bp upstream
Tssr144687	transcription start site region 144687	220 bp upstream
Tssr144688	transcription start site region 144688	358 bp upstream
Tssr144689	transcription start site region 144689	515 bp upstream
Tssr144690	transcription start site region 144690	550 bp upstream
Tssr144691	transcription start site region 144691	570 bp upstream
Tssr144692	transcription start site region 144692	626 bp upstream
Tssr144693	transcription start site region 144693	674 bp upstream
Tssr144694	transcription start site region 144694	709 bp upstream
Tssr144695	transcription start site region 144695	757 bp upstream
Tssr144696	transcription start site region 144696	774 bp upstream
Tssr144697	transcription start site region 144697	1464 bp upstream
Tssr148130	transcription start site region 148130	572 bp downstream