rs107836874 SNP Detail

Summary

• ID
  rs107836874
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45866098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGTTAAAA TGCCTCCATA
  AGATCCAGCT GTAAGCCTCT TTCTTAATTA GTGACTGATG GGGAAGGCCC ACCCCATCCC
  ATTGTGCATG ATGCCATCCC TGGGCTGGTA TTCCTGGGTT CTATAAGAAA GCAGGCTGAG
  CAAGCCATGG GGAGCAAGCC AGTGTGCAAG ACGCTCCCCA TGGCCTCTGC ATCAGCTTCT
  G
  CCTCCAGGAT CATGTCCTGT TTCAGTTTTG TCCTGACTTC CTTTGATAAT GGATTATGAT
  CTTGAAGTAT AAGCCGAATA AAACCTTCTC TCCCCAATTT GCTTTTTGGT CAGGGTATTT
  CATTGCAGCA ATAGAAACGC TAAGACACCC CACCACCACC ACCAACCTAC ACAAACTCCC
  CACAAAGTAG CCGGTTTATG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325403384	CHEV_17_45692121	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs107836874					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45866098 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9193	CpG island 9193	403 bp proximal
Nfkbie	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	531 bp upstream
Rr405302	regulatory region 405302	300 bp upstream
Rr527427	regulatory region 527427	198 bp distal
Rr527428	regulatory region 527428	84 bp proximal
Rr527429	regulatory region 527429	1539 bp proximal
Tssr144787	transcription start site region 144787	464 bp upstream
Tssr144788	transcription start site region 144788	521 bp upstream
Tssr144789	transcription start site region 144789	555 bp upstream
Tssr144790	transcription start site region 144790	622 bp upstream
Tssr144791	transcription start site region 144791	633 bp upstream
Tssr144792	transcription start site region 144792	706 bp upstream
Tssr144793	transcription start site region 144793	1087 bp upstream