rs107838473 SNP Detail

Summary

• ID
  rs107838473
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65543677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGACGAT AGCTGAAAAC
  CCACAGGGAG TAACTCGATA AAGACGCCTA GGACGTAATT CATAACAGAG GACGTCGGAG
  TGTGGAGGAG TGTTGGGAAA GGTGATGACT CATATTCCCT GCACAGTGTA CAAGCTCAAA
  ATAGTGAGGC TGTTCCTACA GGCAAATGGG AGCTGCAGCC CCCGGCTAGG GATGATCTTT
  Y
  GCTTTGTGCT GTCTGAGTCT AATACTACTT TTCATGGCAG TTGTGTGTTG CCCGTGGTCA
  CTTTACAAGC AGAAGGGGCA TTCATCTATG TGTGTGATCT GGAGGAAGTT TTCTAATTCC
  CTGAGCTTGT GTCTGCAAAA CAGAGATGAT GTAGATGAAG TTAGAAGTGA GTAATTTATG
  AGGTGAGTTC TTTAGTATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135252829	ENSMUSSNP5867523	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107838473					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65543677 () rs orientation: forward

Symbol	Name	Function Class
Rr577715	regulatory region 577715	25 bp distal
Rr577716	regulatory region 577716	1062 bp proximal