rs107838734 SNP Detail

Summary

• ID
  rs107838734
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:72776898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGT GACGGACAGC TCGGCGTTCC
  T
  ATGTCCCTCG GAAACTCGAG CGCTC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss144619253	ENSMUSSNP4755129	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs107838734					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:72776898 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5831	CpG island 5831	within coordinates
Cpgi5832	CpG island 5832	1685 bp proximal
Gm20554	predicted gene, 20554	215 bp upstream
Irx2	Iroquois homeobox 2	41 bp upstream
Rr273617	regulatory region 273617	1098 bp distal
Rr281620	regulatory region 281620	within coordinates
Tssr120305	transcription start site region 120305	7 bp upstream
Tssr120306	transcription start site region 120306	23 bp upstream
Tssr120307	transcription start site region 120307	52 bp upstream
Tssr123170	transcription start site region 123170	274 bp upstream
Tssr123171	transcription start site region 123171	193 bp upstream
Tssr123172	transcription start site region 123172	172 bp upstream