rs107839511 SNP Detail

Summary

• ID
  rs107839511
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:74112766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCGAGTCC CCCATTGATT
  CCTATATGAT GTCCCTCCTC AGTTCTTAGC CCTGGTCATT TTATTAAGAG TCATCCCTGT
  TGTCTGATCT GGGCACTGAA ACTGAGGCAC AGAAGGAACC AGACTCCTAA TGAAGGTGGG
  GATACCGTAA CCCTCCTTTT GACTAGAATC TCTTATCTCG TGAAGGGCTT GGGATTATCC
  Y
  GGGGAGCCTT ACCTTTGCAG CCGAGTTGTT CTCATGGTCG CGGGCCTGGG GATGGGGGTG
  AACTGGAGAC CCTGGGGTCA TTTATTCTTT TACCGTTTTT CCTTCTCTCT GACAGTGCTT
  TTAGGGCTGT CTCTTAGAGA AGCAGAATAC TTTTAATAAG TTTCTTCTTT GAACTTAATA
  GTTCAATAAT AATAATAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399003182	MGP_WTSI_17_74155111	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107839511					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399003182	MGP_WTSI_17_74155111	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:74112766 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9490	CpG island 9490	268 bp distal
Ehd3	EH-domain containing 3	within coordinates
Rr530824	regulatory region 530824	920 bp distal
Rr530825	regulatory region 530825	1110 bp distal
Rr530826	regulatory region 530826	502 bp proximal
Rr530827	regulatory region 530827	1567 bp proximal
Tssr145810	transcription start site region 145810	932 bp downstream
Tssr145811	transcription start site region 145811	900 bp downstream
Tssr145812	transcription start site region 145812	870 bp downstream
Tssr145813	transcription start site region 145813	830 bp downstream
Tssr145814	transcription start site region 145814	815 bp downstream