rs107839869 SNP Detail

Summary

• ID
  rs107839869
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:86236529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCTCTTT CTTTCATATG
  CAAAAAAAAA ATGTCTTTCC CAATTTACTG TGTCCAGAGC ACACAGAAGG CACACAGTCG
  GCCTGCCTGG GAGACTTCTT AGACCAGTGT GCCCCAAGTT TATAGATAAG ATTCTTCTGC
  TCAAAGATGT GTTCGCTGTT GCGGCTAGCT AGGGCTCTTC TCTTCTCATA GTAGAGAAAG
  Y
  CCTTTCAAGG GTGTGGTCAG GGTAACTCTG GATTCTCACT TGCTCTTTCT CTCTTTCTCA
  TCTATCAAAG GGGGTGACAC TAGAGCCTGG CCACTGCCTC ACAACTGTCT AGAGGTTAAT
  TATGAAGGAA CAGGTGACAG AACTCCTGTC AGAAGTCATC AGTCAATCCA TACTGCTGGT
  ACCTTTCTGT AGCAGGTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325490001	CHEV_17_86328441	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs107839869					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:86236529 () rs orientation: forward

Symbol	Name	Function Class
Gm30117	predicted gene, 30117	382 bp upstream
Rr532331	regulatory region 532331	566 bp distal
Rr532332	regulatory region 532332	167 bp distal
Rr532333	regulatory region 532333	733 bp proximal
Tssr149724	transcription start site region 149724	519 bp upstream