rs107840955 SNP Detail

Summary

• ID
  rs107840955
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27938096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAATTCAA TTTGTTTCTG
  TCCCCATTGT TCAGAGAGCA CACCCGCCTC ACCCTGGAGC TGGAGGAAGC GCCTCTTCCT
  CATGGGAGAG CCTTCTGGAG TGTGGGAAAG TAGAGGAGAG ATGTGGGTAG GAGCTGCCTT
  GAATGGGGAC ACCACCTGGG AACATCTAGC AGACTGGGTG GGGGGGCTTC CTCACAGGGA
  R
  CTATAGGATG GAGGCCAGGA CTTCCTGGCC CACAGTAATT TCACCTGCAC CTCTGACCCC
  ATGATACACC CCCCCCCCAG ATCAGGCACG AATGTACATG GATACACACA CACACACACA
  TCTATTCCTT GGTGTCCCTT CCTCATCAGT TGACCACATC AGAGGGCCAC ATTCAGCTGC
  TTCTTTATGA TCCAGTTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325349189	CHEV_17_27856067	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs107840955					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27938096 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8855	CpG island 8855	1734 bp distal
Spdef	SAM pointed domain containing ets transcription factor	within coordinates