rs107841877 SNP Detail

Summary

• ID
  rs107841877
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72721671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTTTATT AATTCTGGCA
  AGCAGCAGCA CCACCTAGAA AGAGTTAGGA ACTCACGTTC CACCCTCTCT CCCAGCAGCC
  CAGCACTGGA GGCTGACCAC ATGTGTGAGG CCAGTCTGAT TCAGTCTGTA TAGTGAGTTC
  CAGGCCAGCC AGGAGCTGAC TTAGTCAGAG CTTGCCTCAA AAAGTGTTGG AGTGGCGCTG
  R
  AGAAATGGCT CCATTGGTAA AGCGCCTGTT ATGCAAGCAA GACTTTGGAT CATAAGCACT
  CATGTAAAAA ATACACTGGG TAAGGTGGGA GTTGATGGAT CCCCAGTGTT CACTGGCCAA
  CCATGCCAGC CAACCAGTGA ATTCAGTGAT AGACCCTACC TCGAATGATA ACGTGAAGAA
  GAACGTTTGA GGGAGATGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133287001	ENSMUSSNP3848844	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs107841877					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72721671 () rs orientation: forward

Symbol	Name	Function Class
Gm31249	predicted gene, 31249	within coordinates
Gm67726	predicted gene, 67726	within coordinates
Tcf7l1	transcription factor 7 like 1 (T cell specific, HMG box)	within coordinates
Tssr57163	transcription start site region 57163	630 bp downstream