rs107847481 SNP Detail

Summary

• ID
  rs107847481
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141264080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAAATCT GCATGATGTA
  AAATGTCAAG TCTGACCACC CAACACAGGA GCAGAGCGAA TGAGGCGATG CACGTGTTTG
  CACGTCGGGT GCGTATCAAT TTCCCATGCA GAGACCCATG GAAGAGCCAC TGGGCGATTT
  AAAGGAGGTA CAGCGCAGAG GGGTTTCCAC TCCAGAACCT AAGAAAGCGG AGTGCTATCT
  C
  CTCCACGCTG AGGACCTGCT ACTAGAGGGC AGAGACCCGA GCCGAGGGGT GGAGCAGCAC
  GGGCAGAGAA AGTTCCCATC TGCTGGCGCT CCAGCTGCTG CAGTCCCCTT TCATCCCCGG
  GCACCCCGGC CAACACTCCA TCTCCGGACC TCCCCCTCTC CCGTGTCTCA GACACAACGT
  AGTAAACACC CGGAGTCCCA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147740580	ENSMUSSNP5863065	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321387942	CHEV_4_141092684	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs107847481					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141264080 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15233	CpG island 15233	within coordinates
Cpgi15234	CpG island 15234	650 bp proximal
Gm4123	predicted gene 4123	within coordinates
Rr1207	regulatory region 1207	within coordinates
Rr603787	regulatory region 603787	1354 bp distal
Rr603788	regulatory region 603788	15 bp proximal
Rr603789	regulatory region 603789	1670 bp proximal
Spen	spen family transcription repressor	within coordinates
Tssr44321	transcription start site region 44321	1665 bp downstream
Tssr44322	transcription start site region 44322	1793 bp downstream