rs107848097 SNP Detail

Summary

• ID
  rs107848097
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88278101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCCAATG AGGGCAGGAT
  AAATGCACAG TAAAGACACG TTCCTAAGGA AATCCCCCAT CCCTAAAGCC TGATTAGTGG
  AATAACTTGA CATGGATGTT TGTGGATTTT AGGCTTAAAA TTTCCATAGG ATTCTAGCTA
  GGAGACACAG TTCCTGAGTC TGGACTATGT CCCTGAATGA TCAGTCTTGG GTGTGGCATT
  Y
  AATAAGCCAT CCCTGTTTGA CTGAGATCAG TGTCTGAGTA GTTTGTGTGG TGATCTCCAG
  ACCCAACAAT GTGTATAAAA TATATATGGA TACACACAGT ATGTGTGTGT GTGGTGTGTA
  TCTCTGTGTA TGTGTGTATT TCTGTATGCA TATGTGTATG CATGTGTGTA TATGTATGTG
  TATGTCTCTA TGTGTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325500520	CHEV_17_88370013	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs107848097					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88278101 () rs orientation: forward

Symbol	Name	Function Class
Gm50041	predicted gene, 50041	1453 bp upstream
Rr333904	regulatory region 333904	1701 bp distal
Rr343663	regulatory region 343663	1102 bp distal
Rr405523	regulatory region 405523	1371 bp upstream