rs107849029 SNP Detail

Summary

• ID
  rs107849029
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:96358062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCGCCACG AGGGCACTGA
  AGCCAGGTCG TCCCCGCCCT GCTCTTCTGC TCCTACCAAC TCCTTCCCCC TTTGCCAGCT
  TCCGCGCGGA ACCCTTTTTC GCATTTCCGT GCAGTTGAAA CCCGGGACCC ACTTCGTCAG
  CACAATCCGG AACAGTCAAC ATGGCGGCGG CCGTAAGGTG CCTCCGTAGA GGTAAGAGGA
  R
  CAGTGTTCTT GCGTGGAAAG TAAATCTAGA GCCAAGTTTC CTGTTGCAGC GGAATCCATG
  GCAGAATCTC GTAGGCACCG GTCAGCTTCT CGGTCCTCGA AATGCTTCCG TGATCTTCTG
  GGCTCCACAG CCCAGAGGGT CATCAGTGCT TAAAAGCGAC ACTTAACGCA AGGGTTCTCT
  CTTGGAGCAG GTCATTTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148870832	ENSMUSSNP1188974	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs107849029					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:96358062 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16074	CpG island 16074	within coordinates
Gm72185	predicted gene, 72185	135 bp upstream
Mrpl1	mitochondrial ribosomal protein L1	within coordinates
Rr367885	regulatory region 367885	within coordinates
Rr614892	regulatory region 614892	1292 bp distal
Rr614893	regulatory region 614893	700 bp distal
Rr614894	regulatory region 614894	162 bp distal
Rr614895	regulatory region 614895	49 bp distal
Rr614896	regulatory region 614896	within coordinates
Tssr47395	transcription start site region 47395	715 bp downstream
Tssr47396	transcription start site region 47396	440 bp downstream
Tssr47397	transcription start site region 47397	42 bp downstream
Tssr51962	transcription start site region 51962	177 bp upstream