rs107855145 SNP Detail

Summary

• ID
  rs107855145
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28045790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTTTAA AACCTGAGGA
  GGGGCCTTGA GAGATGGCTC ATTGGTTACG AGCACTCAGT GCCTTTCCGA AGGTCCTGAG
  TCCAATGCCC AGCACCCACA TGGCAGTTCA CTATGGTCTG ATGCCATCCC TGGTGTGCAG
  TGTACATGAA GACAAAACAC TGATATACAT AAAATATATA TAAATAAAGA CTGGGGATGA
  M
  CCCGCTCTGC GGGCTCAACT TTAATCCCGA CACTTTGGGA GGCAGAGGCT GAGAGTTCTA
  AACTAGCCAG GACCACAGGA GACCCCGTCT TCAGACAAAC AAAACACGTA GAGGAACCTC
  ACTAAGAGAG AAAGCTTAAA AGAAAGGAGA TGGCCACTTG GCGGAAGGGA GGGGTGGGAA
  GGGGAGGGGT AGGGAAGGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325349857	CHEV_17_27963761	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs107855145					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28045790 () rs orientation: forward

Symbol	Name	Function Class
Gm65125	predicted gene, 65125	within coordinates
Rr405125	regulatory region 405125	313 bp downstream
Rr405126	regulatory region 405126	441 bp upstream
Tssr143360	transcription start site region 143360	1567 bp downstream
Tssr143361	transcription start site region 143361	1516 bp downstream
Tssr147072	transcription start site region 147072	772 bp upstream
Tssr147073	transcription start site region 147073	108 bp downstream