rs107857890 SNP Detail

Summary

• ID
  rs107857890
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:11797962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGGACCT GGGTTCAATT
  CCCAGCATCC ACATGGTGAC ACACAGTTCC AGGGGATGCA ACGCCCTCTT CTGGGCTCTG
  CAGAGGTTAC ACACATGTGG TATACAGACA TAATGCAGGC AAAAACATTC ATACAAGTAA
  AAAAAAAATT TTTTTAAGTC CCAGCAAATT ATTTTAAAGG ATATAATTGA TTTCAACAGG
  A
  AAAAAATTGT GACTCTCATG CAAATATAAA ATGAATATAT TTTAATGTTT TAGCTTATTA
  GTGAAGCAAC CAGTAAGAGG TTAAACTCAT TCAGATCCAC AGACAAACAG CAGGAAGGCT
  GGCATGAATA GGTTACTTGA TGCAAAACTA GCTCTGGGGA TGGGAGAAGA AACCGTGCTT
  CTCCTGTACA CTAAGTCCTT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss146053689	ENSMUSSNP527468	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs107857890					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11797962 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi10634	CpG island 10634			1202 bp distal
Cpgi10635	CpG island 10635			454 bp distal
Gm41810	predicted gene, 41810			within coordinates
Gm59062	predicted gene, 59062			within coordinates
Rr544383	regulatory region 544383			1888 bp distal
Rr544384	regulatory region 544384			1166 bp distal
Rr544385	regulatory region 544385			540 bp distal
Rr544386	regulatory region 544386			59 bp distal
Rr544387	regulatory region 544387			122 bp distal
Stx3	syntaxin 3			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr155286	transcription start site region 155286			1556 bp downstream
Tssr155287	transcription start site region 155287			883 bp upstream
Tssr155288	transcription start site region 155288			1224 bp upstream
Tssr158399	transcription start site region 158399			1715 bp upstream
Tssr158400	transcription start site region 158400			1633 bp upstream