rs107860548 SNP Detail

Summary

• ID
  rs107860548
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171487697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATTATAGT TCCCCTTCCC ATGGAGGAGA TTCATGTGTC
  TCCACAATCC TTTCCTCTAT ACCTAACCTC TCTGGGTATA CAGATTGTAG GTTAGTTGTT
  R
  TTATTATTAT TATTTATTTT TTTGGTTTTT CGAGACAGGG TTTCTCTGTA TAGCTCTGGC
  TGTCCTGGAA CTCACTTTGT AGACCAGGCT GGCCTCGAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss120001870	PARCsnp_1.15012	PARC_SEQ	INBRED	f	SNP	A	G
ss120004168	PARCsnp_1.04352	PARC_SEQ	INBRED	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs107860548					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171487697 () rs orientation: forward

Symbol	Name	Function Class
Gm70589	predicted gene, 70589	164 bp downstream
Rr423376	regulatory region 423376	1163 bp distal
Rr423377	regulatory region 423377	1201 bp distal