rs107862641 SNP Detail

Summary

• ID
  rs107862641
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85565988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTA GTGGTGGTTT GGGGACAGAC
  Y
  CCTAGCTCAG GCCTTGTATA TTCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145395118	ENSMUSSNP6693544	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss322752018	CHEV_8_87363258	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs107862641					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85565988 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20722	CpG island 20722	782 bp proximal
Gm64216	predicted gene, 64216	within coordinates
Rad23a	RAD23 homolog A, nucleotide excision repair protein	within coordinates
Rr401026	regulatory region 401026	1343 bp upstream
Rr666631	regulatory region 666631	1366 bp distal
Rr666632	regulatory region 666632	1272 bp proximal
Tssr82172	transcription start site region 82172	770 bp upstream
Tssr82173	transcription start site region 82173	736 bp upstream
Tssr82174	transcription start site region 82174	672 bp upstream
Tssr82175	transcription start site region 82175	1268 bp downstream