rs107862992 SNP Detail

Summary

• ID
  rs107862992
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26316243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATCTGAT GCCCACTTCT
  GGCATGCAGG CATACACAAA ATAAAATTTT AAAAATCTTT AAAAAGAAGG GGAAAAAAAA
  AAAAAGCATT GCCAGCCGGG CGGTGGTGGC GCACGCCCTT AATCCCGGCA CTTGGGAGGC
  AGAGGCAGGC AAATTTCTGA CTTTGAGGTC AGCCTGGTCT ACAGAGTGAG TTCCAGGACA
  R
  CCAGGGCTAC ACAAAGAAAC CCTGTCTCAG AAAACAAAAA CAAAAACAAA CAAACAAACA
  AAAGCATTGC CACTAATCTA GCAGTGGTGC AGCACTCTGG TTGGGTTTTT TGTTTTTTGT
  TTGTTTGGTT GGTTTGGTTT TTCCAGGCAG GGTTTCTCTG TGTAGCCCTG GCTGTCCTGG
  AACTCACTCT GTAGACCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397891220	MGP_WTSI_17_26234214	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107862992					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397891220	MGP_WTSI_17_26234214	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26316243 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8797	CpG island 8797	1606 bp distal
Gm8186	predicted gene 8186	1722 bp downstream
Nme4	NME/NM23 nucleoside diphosphate kinase 4	1667 bp upstream
Rr523761	regulatory region 523761	1807 bp distal
Rr523762	regulatory region 523762	1435 bp distal
Tssr146914	transcription start site region 146914	1820 bp upstream
Tssr146915	transcription start site region 146915	1808 bp upstream
Tssr146916	transcription start site region 146916	1789 bp upstream
Tssr146917	transcription start site region 146917	1755 bp upstream
Tssr146918	transcription start site region 146918	1988 bp downstream