rs107866378 SNP Detail

Summary

• ID
  rs107866378
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32385719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCAT GGGCGGTGGT GGCGGTGGCA
  R
  GGCCATCAGG CGACGACGGC GGCGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145471701	ENSMUSSNP1652755	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107866378					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32385719 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8964	CpG island 8964	485 bp distal
Cpgi8965	CpG island 8965	within coordinates
Notch3	notch 3	within coordinates
Rr339597	regulatory region 339597	within coordinates
Tssr147343	transcription start site region 147343	1730 bp upstream
Tssr147344	transcription start site region 147344	3 bp downstream
Tssr147345	transcription start site region 147345	134 bp downstream