rs107868485 SNP Detail

Summary

• ID
  rs107868485
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102059127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTATGCCA CATGCTTCCA
  CTACAGTACT TATAATATAG CGTGAACTGA ACTTGTCACT GTGCATCAGG TGTCTCAGCG
  CCATAACTAA TTCTCTAGGC AAGGGTCTGT TGTTTGATGT TTTTGTAGGC TGGCAGTTTG
  GCAAGGCCTA CATCAGCAGT TCTCAACCTT TGGGTCATGG CCCCTTTGGG GAAGGGTTGA
  R
  TGATCTTTCT CAGGAATCTT CTAAGACCAT CGGAAAAAAT ACAGATGTCT ACATTATGAT
  TCATAGCAGA GCAAAATTGT GTTATGAAGT AGCAACCAAA ATAAATGTAT GGTTGGGAAT
  CACCACAACA TTAGAGACTG TATTAAAGGG TCACAGCCTT AGGAAGGTTG GGAACCACTG
  TTCTACATGA ATGAATTCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135554463	ENSMUSSNP3384507	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs107868485					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102059127 () rs orientation: forward

Symbol	Name	Function Class
Gm65665	predicted gene, 65665	within coordinates
Rr582191	regulatory region 582191	1505 bp distal
Rr582192	regulatory region 582192	388 bp proximal
Vangl1	VANGL planar cell polarity 1	1772 bp downstream