rs107869494 SNP Detail

Summary

• ID
  rs107869494
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26757481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCATCCAC ATCACTGACT
  CCTAATCCAA GTTCAGCTTT AGGTGAGAAG AGCCAGGGAG CCACACTTTC TCTCCCCCAG
  GCTGCTTCTT TGGCTTTTGG CCTTTTCCTG TCCTATTTCA GACCCTCTGG CTCACTCCCA
  CAGAAGCTAA GCAAACGAAC TGGAATCAGT GGGTCTGCGT CCCCCACCCC CGGGGGGGGG
  S
  CATTTGAATG TTAAGTTAAA CCAGGTTTTA TACTTTGGTG AAAGGAGCAA GGTGGTGAGA
  TTATCCAGTG ATCCCTGGAG CATTCTTTCC TGTGTGTAGT AGGAACTCTT AATAAACAGT
  GTCCTGTTAG AAGCAAACAT GTTAGACACA GTGAAACTAT AGTATATATT TTAACAAGCC
  TATACAAGGT ATATGGTAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	I/LnJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SWR/J
ss397901893	MGP_WTSI_17_26675452	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	C	G	C	G	G	G	C	G	G	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	I/LnJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SWR/J
rs107869494					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	C	G	C	G	G	G	C	G	G	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397901893	MGP_WTSI_17_26675452	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26757481 () rs orientation: forward

Symbol	Name	Function Class
Gm50275	predicted gene, 50275	267 bp upstream
Rr405114	regulatory region 405114	157 bp downstream
Tssr143246	transcription start site region 143246	155 bp downstream