rs107869860 SNP Detail

Summary

• ID
  rs107869860
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141152183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ACACACACAC ACACACGCGC GCGCGCGCGC GCGCCATTGT
  CCTATGCCTT AAATACTCAT TCCCACTGGT TGGAGCCCAA TTCAAAGCAT TCTAAGAGTC
  R
  CAGTTAGCAT CTCTGTTTTC ATCAATGGAG ACTGGCGTCT CTGAGCCAGT TGGATGCCCA
  GGTTTGTCTC TGAAGCCAGC GCTGCCTCAG CGGCTCTCAG A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147736179	ENSMUSSNP788183	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107869860					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141152183 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15228	CpG island 15228	964 bp proximal
Gm70191	predicted gene, 70191	within coordinates
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr603759	regulatory region 603759	within coordinates
Rr603760	regulatory region 603760	431 bp proximal
Rr603761	regulatory region 603761	1422 bp proximal
Rr603762	regulatory region 603762	1932 bp proximal
Tssr40063	transcription start site region 40063	863 bp downstream
Tssr40064	transcription start site region 40064	802 bp downstream
Tssr40065	transcription start site region 40065	775 bp downstream
Tssr40066	transcription start site region 40066	671 bp downstream
Tssr40067	transcription start site region 40067	617 bp downstream
Tssr40068	transcription start site region 40068	562 bp downstream
Tssr40069	transcription start site region 40069	435 bp downstream
Tssr40070	transcription start site region 40070	341 bp downstream
Tssr40071	transcription start site region 40071	324 bp downstream
Tssr40072	transcription start site region 40072	279 bp downstream
Tssr40073	transcription start site region 40073	254 bp downstream
Tssr40074	transcription start site region 40074	227 bp downstream
Tssr40075	transcription start site region 40075	203 bp downstream
Tssr40076	transcription start site region 40076	187 bp downstream
Tssr40077	transcription start site region 40077	167 bp downstream
Tssr40078	transcription start site region 40078	1537 bp upstream
Tssr44315	transcription start site region 44315	798 bp upstream
Tssr44316	transcription start site region 44316	700 bp upstream
Tssr44317	transcription start site region 44317	672 bp upstream
Tssr44318	transcription start site region 44318	272 bp upstream
Tssr44319	transcription start site region 44319	696 bp downstream