rs107870964 SNP Detail

Summary

• ID
  rs107870964
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23733885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAACTTCT TGAATTCTTT
  GTATATTTTG GATCTTAGCC CTCTGTGGGA TGTAGGGTTG GTAAATATCT TTTCCCAACT
  TATTGATTGC CAGTTTGTCC TTTGCCTTAC AGAAGCTTTG CAATTTTATG AGGTCCCATT
  TGTCAATTCT TGATCTTAGA GCATAAGCTA TTGGAGTTCT ATTCAGGAAA AATCCCCGTG
  T
  CCATGTGCTC AAGGTTCTTC CCCACTTTCT TTTCTATTAG TTTCAGTATA TCTGGTTTTA
  TGTGGAGGTC CTTGATCCAC TTGGACTTGA GCTTTGTATA AGTAGATAAG AATGGATCAA
  TTTGCAAACT AAATAAATAT CTTTGTAAAG AGTCTCACAA AAGGTATGCT CCAAGTTGAG
  GGGAAGTGTG GCAAGACATG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	AKR/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	CBA/J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss130667945	NCBIM37_NT_039649_chr17_23651878	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	AKR/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	CBA/J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs107870964					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130667945	NCBIM37_NT_039649_chr17_23651878	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23733885 () rs orientation: forward

Symbol	Name	Function Class
Gm7898	predicted gene 7898	543 bp upstream
Rr329666	regulatory region 329666	516 bp proximal