rs107875592 SNP Detail

Summary

• ID
  rs107875592
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170901580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CATCCATGCA TCCATGCATC CATGCATCCA TGCATCCATG
  CATCCATCCA TCCATCCATC CATCCATCCA TCCCTCCATC CCTCCAACCA TGTATCCATG
  C
  ATCCATGCAT CCTTCCATGC ACGCATCCTT CCATCCACCC ACCCACCAAC CCAACCAACC
  GTCCGTGAAT CCATCCATGT TTGCCTCCAT CCATCCATGC A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146152475	ENSMUSSNP2073343	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107875592					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170901580 () rs orientation: forward

Symbol	Name	Function Class
Gm56232	predicted gene, 56232	1724 bp upstream
n-TDgtc7	nuclear encoded tRNA aspartic acid 7 (anticodon GTC)	947 bp upstream
n-TGgcc13	nuclear encoded tRNA glycine 13 (anticodon GCC)	291 bp upstream
n-TGtcc5	nuclear encoded tRNA glycine 5 (anticodon TCC)	1606 bp upstream
n-TLcag7	nuclear encoded tRNA leucine 7 (anticodon CAG)	310 bp downstream
Rr423203	regulatory region 423203	1322 bp distal
Rr423204	regulatory region 423204	1511 bp distal