rs107880467 SNP Detail

Summary

• ID
  rs107880467
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29578216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGGTTGC TGGGCAGGAG
  GCTCCAGGCT CACAGCTACC ACAGCAGAAA CTCTGCCAGG CACTTTGGGC TCCAGGATGG
  CTCACACTTG ATCCGAGGAC AAAGACTAGC TTCAGTGGAG GGTCCTGGCT CAGGATCCAT
  GGGAGAGCAA TGAATGAATG GCTTTCCAGC TTGAATGAGC AGAGCAGAGG CGCTGGTCAC
  R
  TGTTCTAGAA ACCCTGAGTG ACCAAGAGGC AGATTTCCCT AGGGTGCTGT GATCAGGGGA
  CCCTGAGGAT GGAGTGCATG GAGGTCACCC TCCAGGTTCC CTGGGTCTTT GCTGGAGTCA
  TAGGACACTT ACCTGGGCTT CAGAAATGGC AGTTCTTCCC CTGTTCTTCC TGGGTGACCT
  CAGTCAGGTG TCTTGACTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397963808	MGP_WTSI_17_29496187	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107880467					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397963808	MGP_WTSI_17_29496187	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29578216 () rs orientation: forward

Symbol	Name	Function Class
Fgd2	FYVE, RhoGEF and PH domain containing 2	1662 bp upstream
Rr1771	regulatory region 1771	1364 bp distal
Rr405148	regulatory region 405148	1488 bp upstream
Rr524884	regulatory region 524884	1708 bp distal
Rr524885	regulatory region 524885	1483 bp proximal
Rr524886	regulatory region 524886	1880 bp proximal
Tssr143531	transcription start site region 143531	1667 bp upstream
Tssr143532	transcription start site region 143532	1681 bp upstream
Tssr143533	transcription start site region 143533	1714 bp upstream
Tssr143534	transcription start site region 143534	1727 bp upstream