rs107882657 SNP Detail

Summary

• ID
  rs107882657
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:86234004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCCCGTCC TAAACTGGGT
  CCAGGGAACA TCACTGAAAA GGGGCCAGAA AGATGGCAAG ACCTAGAAAC TGGGGAGAAA
  CCCTTTGAAA CATCTTCCAG CTCTGACATG GCTGATTTAA GAATGGACAC AGACTGTACG
  CCTACCCACA CAAGACACTG CACAAAAAGC ACATAAAAAT AAGACATGAA ATGAAAAGGA
  R
  GTTAGTGGAC TGTGGGGTAG ATAAGGAAGG TTACCCTGGT GGAAGGAACT GTTTATGATA
  CATTATAATA CACATTTGTT TGTGTGTGTG TGTCTATATA TACATATGTA TGAAATTGTC
  AAAAACTTAA ATTATCAAAA AAGGGAAAGA TAGTCCTAAT GTCCAGACTT ATGAGCTCCG
  TTTGATGAAG TACGATATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325489965	CHEV_17_86325916	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs107882657					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:86234004 () rs orientation: forward

Symbol	Name	Function Class
Gm30117	predicted gene, 30117	within coordinates
Rr532331	regulatory region 532331	1728 bp proximal
Rr532332	regulatory region 532332	1960 bp proximal
Tssr149724	transcription start site region 149724	1987 bp downstream