rs107883880 SNP Detail

Summary

• ID
  rs107883880
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27256574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGATGTG AAAGTTCAGG
  AGAGGGGCTG GAGAGATGGC TCAGTGGTTA AGAGCACCGA CTGCTCTTCC GAAGGTCCTG
  AGTTCAAATC CCAGCAACCA CATGGTGGCT CACAACCATC TGTAGTGAGA TCTGATGCCC
  TCTTCTGGTG CATCTGAAGA CAGCTACAGT GTACTTAGAT ATAATAATAA ATAAATCTTT
  W
  AAAAAAAAAA AAAAAAGAAA GAAAGTTCAG GAGAACGGCT CTCCCAGACT AGATGCTGGT
  CACGGCTGGG TATTTCAGAG GTCCCAGGTA GAGGTTGGGG GTGTGTGTTA AAGGGGTACT
  ATGTGGATGC AAAGGCCTAA ATCCAGAGGC AAAGGGAACT TGAGTGTGGA GGAGTGGCCT
  TCAGCAAGGT TTCCTGGGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss130699931	NCBIM37_NT_039649_chr17_27174545	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107883880					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130699931	NCBIM37_NT_039649_chr17_27174545	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27256574 () rs orientation: forward

Symbol	Name	Function Class
Ggnbp1	gametogenetin binding protein 1	1222 bp downstream
Gm50253	predicted gene, 50253	1222 bp downstream
Gm65707	predicted gene, 65707	1327 bp downstream
Rr330035	regulatory region 330035	within coordinates
Rr392460	regulatory region 392460	19 bp upstream
Tssr143302	transcription start site region 143302	210 bp upstream
Tssr143303	transcription start site region 143303	534 bp upstream
Tssr143304	transcription start site region 143304	1021 bp upstream
Tssr146997	transcription start site region 146997	837 bp downstream
Tssr146998	transcription start site region 146998	1929 bp downstream