rs107887070 SNP Detail

Summary

• ID
  rs107887070
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126815497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GATTTCTGAG TTCGAGGCCA GCCTGGTCTA TAAAGTGAGG
  TCCAGGACAG CCAGGGCTAT ACAGAGAAAC CCTGTCTCGA AAAACCAAAA AAAAAAAAAA
  C
  CAAAAAAAAA AAAAAACAAA AAACAAAAAA AAAACAAAAA AAAAAAAAAA CCCGAGGACG
  TGGGTCCGTG GGAAAGCACT TTGAAGACAG TGAGACAGGC A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss145878292	ENSMUSSNP554909	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs107887070					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126815497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	1418 bp distal
Cpgi19732	CpG island 19732	841 bp distal
Rr368445	regulatory region 368445	1692 bp upstream
Rr655747	regulatory region 655747	864 bp distal
Rr655748	regulatory region 655748	1968 bp proximal
Septin1	septin 1	within coordinates
Tssr69180	transcription start site region 69180	1758 bp downstream
Tssr74961	transcription start site region 74961	1562 bp upstream
Tssr74962	transcription start site region 74962	1292 bp upstream
Tssr74963	transcription start site region 74963	1255 bp upstream
Tssr74964	transcription start site region 74964	1222 bp upstream
Tssr74965	transcription start site region 74965	976 bp upstream
Tssr74966	transcription start site region 74966	882 bp upstream
Tssr74967	transcription start site region 74967	630 bp upstream
Tssr74968	transcription start site region 74968	1684 bp downstream